PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 860911
Common NameARALYDRAFT_660355
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C2H2
Protein Properties Length: 314aa    MW: 34760.5 Da    PI: 6.4471
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
860911genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.90.00016261281121
              EEETTTTEEESSHHHHHHHHH CS
  zf-C2H2   1 ykCpdCgksFsrksnLkrHir 21 
              + C+ C+++F++ + L++H +
   860911 261 FGCKSCTRTFTSEMGLQSHTK 281
              56*****************76 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF057645.8E-8139284No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MFMIHAKNSS KSRHKRPRIV LSLTNLNVLC LTKCVEVRNG PAHHIYPGEG RPLITRDDQP  60
YVHFISQVAL GENQNNGTEP IQLYLIVGSA KRLIGTLSHE RFPQLATAIV LERHFSLSHT  120
WKNGSVFFSD DVIDVDGHDD YDDCDFEDSG EEEEEKLTAE PDSEEDDEDD SSDDEVDDSS  180
EEETPKKPEA SKKRSAEANS SKNPAPNKKA KFETPQKTDS KKPHVHVATP HPSKQAGKNS  240
GGSSIGETSK QQQTPKSAGA FGCKSCTRTF TSEMGLQSHT KGQTQCSCLK RRRSSLMTTL  300
YNIYSRTLMS FGT*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3728890.0AF372889.1 Arabidopsis thaliana AT5g03740/F17C15_160 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002873185.10.0predicted protein
SwissprotQ9LZR57e-89HDT3_ARATH; Histone deacetylase HDT3
TrEMBLD7LY920.0D7LY92_ARALL; Predicted protein
STRINGAl_scaffold_0006_4200.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20272667
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03740.13e-51histone deacetylase 2C